Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
H3A4P4_LATCHUncharacterized protein. (499 aa)    
Predicted Functional Partners:
HAO1
Hydroxyacid oxidase 1.
     
 0.652
AMD1
S-adenosylmethionine decarboxylase proenzyme.
      
 0.641
SMS
Spermine synthase.
      
 0.591
SRM
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
      
 0.591
STARD4
StAR related lipid transfer domain containing 4.
      
 0.590
ODC1
Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
   
  
 0.589
PTGS2
Prostaglandin-endoperoxide synthase 2.
      
 0.533
HAO2
Hydroxyacid oxidase 2.
     
 0.525
H3AHB6_LATCH
Uncharacterized protein.
     
 0.478
SLC22A16
Solute carrier family 22 member 16.
     
 0.478
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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