Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SYT11Synaptotagmin 11. (429 aa)    
Predicted Functional Partners:
SYT1
Synaptotagmin 1.
   
 0.794
SYT2
Synaptotagmin 2.
   
 0.794
VAMP3
Vesicle associated membrane protein 3.
    
 0.785
SYT5
Uncharacterized protein.
   
 0.740
STON2
Stonin-2; Adapter protein involved in endocytic machinery. Involved in the synaptic vesicle recycling. May facilitate clathrin-coated vesicle uncoating; Belongs to the Stoned B family.
   
 0.737
VAMP4
Vesicle associated membrane protein 4.
    
 0.717
VAMP2
V-SNARE coiled-coil homology domain-containing protein.
   
 0.698
VAMP8
Vesicle associated membrane protein 8.
    
 0.690
APLP2
Amyloid beta precursor like protein 2.
   
 
 0.690
PDE7A
Phosphodiesterase.
   
  
 0.689
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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