Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3A4S8_LATCHUncharacterized protein. (2030 aa)    
Predicted Functional Partners:
PDZD7
PDZ domain containing 7.
    
 
 0.670
USH1C
USH1 protein network component harmonin.
    
 
 0.669
LAMC1
Laminin subunit gamma 1.
   
 0.667
LAMC3
Laminin subunit gamma 3.
   
 0.667
LAMC2
Uncharacterized protein.
   
 0.667
LAMB1
Laminin subunit beta 1.
   
 0.650
LOC102357703
Laminin, beta 2-like.
   
 0.650
LAMB2
Laminin subunit beta 2.
   
 0.650
LAMB3
Laminin subunit beta 3.
   
 0.650
MYO6
Myosin VI; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.644
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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