Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3A4U8_LATCHUncharacterized protein. (2171 aa)    
Predicted Functional Partners:
CTNNB1
Catenin beta 1.
    
 0.737
PCDH15
Protocadherin related 15.
   
0.736
H3B989_LATCH
Uncharacterized protein.
   
0.736
H3A2E9_LATCH
Uncharacterized protein.
   
 0.714
H3AU51_LATCH
Uncharacterized protein.
   
 0.714
CTNNA1
Catenin (cadherin-associated protein), alpha 1.
   
 0.714
H3B296_LATCH
Uncharacterized protein.
   
 0.714
CDH12
Cadherin 12; Cadherins are calcium-dependent cell adhesion proteins.
    
 
0.685
CDH18
Cadherin 18; Cadherins are calcium-dependent cell adhesion proteins.
     
 
0.664
CDH1
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
    
0.643
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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