STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDH4Cadherin 4; Cadherins are calcium-dependent cell adhesion proteins. (724 aa)    
Predicted Functional Partners:
CTNNB1
Catenin beta 1.
   
 0.806
CTNND1
Catenin delta 1.
    
 0.795
JUP
Junction plakoglobin.
   
 0.741
CTNND2
Uncharacterized protein.
    
 0.738
ARVCF
ARVCF delta catenin family member.
    
 0.681
H3B4B5_LATCH
Uncharacterized protein.
    
 0.592
PKP4
Plakophilin 4.
    
 0.592
CDC42
Cell division cycle 42.
    
 0.559
PTPRG
Protein tyrosine phosphatase receptor type G.
    
 0.545
CDH11
Cadherin 11; Cadherins are calcium-dependent cell adhesion proteins.
  
 
0.524
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.