Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PARNPoly(A)-specific ribonuclease. (529 aa)    
Predicted Functional Partners:
DHX37
DEAH-box helicase 37.
    
 
 0.964
DCP2
Decapping mRNA 2.
     
 0.929
XRN1
5'-3' exoribonuclease 1.
    
 
 0.834
UTP14A
Uncharacterized protein.
    
   0.823
NOCT
Nocturnin.
      
 0.793
DIS3L2
DIS3 like 3'-5' exoribonuclease 2.
   
 
 0.748
EXOSC4
Exosome component 4.
    
 0.744
TSR1
TSR1 ribosome maturation factor.
    
 
 0.741
DIS3L
DIS3 like exosome 3'-5' exoribonuclease.
   
 
 0.702
EXOSC5
Exosome component 5.
    
 0.696
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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