Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3A535_LATCHCHM Rab escort protein. (688 aa)    
Predicted Functional Partners:
RABGGTA
Rab geranylgeranyltransferase subunit alpha.
   
 0.995
RAB7A
RAB7A, member RAS oncogene family.
    
 0.992
RAB31
RAB31, member RAS oncogene family.
    
 0.953
LOC102352152
Uncharacterized protein.
    
 0.949
PTAR1
Protein prenyltransferase alpha subunit repeat containing 1.
   
 0.909
RAB35
RAB35, member RAS oncogene family.
    
 0.904
RAB30
RAB30, member RAS oncogene family.
    
 0.902
RAB1B
RAB1B, member RAS oncogene family.
    
 0.885
RAB1A
RAB1A, member RAS oncogene family.
    
 0.885
RAB12
RAB12, member RAS oncogene family.
    
 0.864
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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