STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3A535_LATCHCHM Rab escort protein. (688 aa)    
Predicted Functional Partners:
RABGGTA
Rab geranylgeranyltransferase subunit alpha.
   
 0.986
LOC102354752
VPS9 domain-containing protein.
     
 0.971
RABGEF1
RAB guanine nucleotide exchange factor (GEF) 1.
     
 0.971
RAB7A
RAB7A, member RAS oncogene family.
    
 0.962
PTAR1
Protein prenyltransferase alpha subunit repeat containing 1.
   
 0.956
RAB14
RAB14, member RAS oncogene family.
    
 0.956
RAB35
RAB35, member RAS oncogene family.
    
 0.927
LOC102352152
Uncharacterized protein.
    
 0.926
LOC102356101
Uncharacterized protein.
    
 0.892
RAB3GAP1
RAB3 GTPase activating protein catalytic subunit 1.
   
 
 0.769
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.