Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DNAJC8DnaJ heat shock protein family (Hsp40) member C8. (276 aa)    
Predicted Functional Partners:
SF3A2
Splicing factor 3a subunit 2.
    
 
 0.963
CDC40
Cell division cycle 40.
     
  0.956
SUGP1
SURP and G-patch domain containing 1.
     
  0.956
PPP1R8
Protein phosphatase 1 regulatory subunit 8.
   
 
 0.954
TCERG1
Transcription elongation regulator 1.
   
 
  0.938
HTATSF1
HIV-1 Tat specific factor 1.
     
 0.938
SRRT
Serrate, RNA effector molecule.
   
 
  0.931
PRPF40A
Pre-mRNA processing factor 40 homolog A.
   
 
 0.931
SF3B2
Splicing factor 3b subunit 2.
   
   0.924
SF3A1
Splicing factor 3a subunit 1.
   
   0.911
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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