Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3A586_LATCHGDNF domain-containing protein. (109 aa)    
Predicted Functional Partners:
RET
Ret proto-oncogene; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.989
LOC102367223
TGF_BETA_2 domain-containing protein.
    
 0.937
H3B2Y5_LATCH
TGF_BETA_2 domain-containing protein.
    
 0.937
GFRA2
GDNF domain-containing protein.
 
      0.900
GDNF
Glial cell derived neurotrophic factor.
    
 0.805
PSPN
Persephin.
     
 0.786
H2ZTV3_LATCH
Uncharacterized protein.
  
  
 0.651
PALMD
Palmdelphin.
      
 0.598
OTX1
Orthodenticle homeobox 1.
      
 0.598
DOK2
Docking protein 2.
     
 0.580
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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