Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UBAP1Ubiquitin associated protein 1. (493 aa)    
Predicted Functional Partners:
VPS28
VPS28 subunit of ESCRT-I; Belongs to the VPS28 family.
     
  0.812
VPS36
Vacuolar protein sorting 36 homolog.
     
  0.687
SNF8
Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
     
  0.687
CCDC59
Coiled-coil domain containing 59.
      
 0.641
CHMP4A
Charged multivesicular body protein 4A.
     
  0.631
CHMP4B
Charged multivesicular body protein 4B.
     
  0.631
CHMP4C
Uncharacterized protein.
     
  0.631
VPS37C
VPS37 C-terminal domain-containing protein.
     
  0.612
STAM
Signal transducing adaptor molecule.
     
  0.609
TSG101
Tumor susceptibility 101.
     
  0.606
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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