LOC102345465 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC102345465

Uncharacterized protein. (347 aa)

Predicted Functional Partners:

RANGAP1

0.990

NUP133

0.986

NUP85

0.985

NUP107

0.985

NUP93

0.984

NUP153

0.982

LOC102350007

0.980

NUP160

0.977

NUP98

0.965

NUP88

0.962

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102345465	LOC102350007	ENSLACP00000004846	ENSLACP00000016022	Uncharacterized protein.	Small ubiquitin-related modifier.	0.980
LOC102345465	NUP107	ENSLACP00000004846	ENSLACP00000011980	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.985
LOC102345465	NUP133	ENSLACP00000004846	ENSLACP00000015757	Uncharacterized protein.	Nucleoporin 133; Belongs to the actin family.	0.986
LOC102345465	NUP153	ENSLACP00000004846	ENSLACP00000007307	Uncharacterized protein.	Nucleoporin 153.	0.982
LOC102345465	NUP160	ENSLACP00000004846	ENSLACP00000021641	Uncharacterized protein.	Nucleoporin 160.	0.977
LOC102345465	NUP85	ENSLACP00000004846	ENSLACP00000004845	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.985
LOC102345465	NUP88	ENSLACP00000004846	ENSLACP00000020753	Uncharacterized protein.	Nucleoporin 88.	0.962
LOC102345465	NUP93	ENSLACP00000004846	ENSLACP00000012660	Uncharacterized protein.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.984
LOC102345465	NUP98	ENSLACP00000004846	ENSLACP00000003011	Uncharacterized protein.	Nucleoporin 98.	0.965
LOC102345465	RANGAP1	ENSLACP00000004846	ENSLACP00000015278	Uncharacterized protein.	Ran GTPase activating protein 1.	0.990
LOC102350007	LOC102345465	ENSLACP00000016022	ENSLACP00000004846	Small ubiquitin-related modifier.	Uncharacterized protein.	0.980
LOC102350007	NUP107	ENSLACP00000016022	ENSLACP00000011980	Small ubiquitin-related modifier.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.720
LOC102350007	NUP133	ENSLACP00000016022	ENSLACP00000015757	Small ubiquitin-related modifier.	Nucleoporin 133; Belongs to the actin family.	0.676
LOC102350007	NUP153	ENSLACP00000016022	ENSLACP00000007307	Small ubiquitin-related modifier.	Nucleoporin 153.	0.746
LOC102350007	NUP85	ENSLACP00000016022	ENSLACP00000004845	Small ubiquitin-related modifier.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.584
LOC102350007	NUP88	ENSLACP00000016022	ENSLACP00000020753	Small ubiquitin-related modifier.	Nucleoporin 88.	0.622
LOC102350007	NUP93	ENSLACP00000016022	ENSLACP00000012660	Small ubiquitin-related modifier.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.706
LOC102350007	NUP98	ENSLACP00000016022	ENSLACP00000003011	Small ubiquitin-related modifier.	Nucleoporin 98.	0.617
LOC102350007	RANGAP1	ENSLACP00000016022	ENSLACP00000015278	Small ubiquitin-related modifier.	Ran GTPase activating protein 1.	0.998
NUP107	LOC102345465	ENSLACP00000011980	ENSLACP00000004846	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.985