Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102361240A2M_recep domain-containing protein. (601 aa)    
Predicted Functional Partners:
H2ZY64_LATCH
A2M_N_2 domain-containing protein.
 
     0.915
LOC102361064
NTR domain-containing protein.
     
 0.744
CBX8
Chromobox 8.
    
 0.731
CBX4
Chromobox 4.
    
 0.725
PCGF2
Polycomb group ring finger 2.
    
 0.658
BMI1
Bmi1 polycomb ring finger oncogene 1b.
    
 0.658
PITPNA
Phosphatidylinositol transfer protein alpha.
      
 0.655
SMTNL2
Smoothelin, like.
      
 0.655
SCML2
Scm polycomb group protein like 2.
    
 0.634
SCMH1
Scm polycomb group protein homolog 1.
    
 0.634
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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