STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TARBP1TAR (HIV-1) RNA binding protein 1. (1639 aa)    
Predicted Functional Partners:
MTREX
Mtr4 exosome RNA helicase.
   
    0.878
MALSU1
Mitochondrial assembly of ribosomal large subunit 1.
   
 
 0.844
MRPL47
Mitochondrial ribosomal protein L47.
   
 
 0.839
MRPL17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
 
 0.824
GTPBP3
GTP binding protein 3, mitochondrial.
   
 
 0.823
MRPL21
Mitochondrial ribosomal protein L21.
   
   0.812
GTPBP8
GTP binding protein 8 (putative).
  
 
 0.791
UTP20
UTP20 small subunit processome component.
   
    0.789
UTP4
UTP4 small subunit processome component.
   
    0.746
TBL3
Transducin beta like 3.
   
  
 0.745
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.