Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TNFAIP6TNF alpha induced protein 6. (279 aa)    
Predicted Functional Partners:
IL6
Uncharacterized protein.
   
  
 0.887
LOC102363090
Multifunctional fusion protein; Belongs to the intercrine alpha (chemokine CxC) family.
   
 
 0.859
PTX3
Uncharacterized protein.
   
 0.816
PLD2-2
Uncharacterized protein.
   
 0.816
THOC7
THO complex 7.
    
   0.802
THOC5
THO complex 5.
    
   0.802
TNFSF11
TNF superfamily member 11; Belongs to the tumor necrosis factor family.
    
 0.737
THOC1
THO complex 1.
    
   0.694
LTA
Lymphotoxin alpha.
   
 
 0.669
CXCL12
C-X-C motif chemokine ligand 12; Belongs to the intercrine alpha (chemokine CxC) family.
    
 
 0.666
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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