STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPNE8Copine 8. (383 aa)    
Predicted Functional Partners:
H3BEX1_LATCH
C2 domain-containing protein.
 
     0.876
ZFC3H1
Zinc finger C3H1-type containing.
      
 0.787
TSPAN8
Tetraspanin.
      
 0.772
NBEA
Uncharacterized protein.
   
  
 0.746
SERGEF
Secretion regulating guanine nucleotide exchange factor.
   
  
 0.745
USH1C
USH1 protein network component harmonin.
      
 0.732
ZNF536
Zinc finger protein 536.
      
 0.644
RNASEH2B
Ribonuclease H2 subunit B.
   
 
 0.602
LGR5
Leucine rich repeat containing G protein-coupled receptor 5.
     
 0.570
RNASEH2A
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
   
 
 0.552
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.