STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102351679Uncharacterized protein. (967 aa)    
Predicted Functional Partners:
LOC102365826
Uncharacterized protein.
  
0.860
COL6A1
VWFA domain-containing protein.
  
0.854
COL6A1-2
Uncharacterized protein.
 
 
 0.840
COL17A1
Collagen type XVII alpha 1 chain.
  
0.585
H3ATS1_LATCH
Uncharacterized protein.
  
 
0.572
PPIB
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 
 0.526
H3AT52_LATCH
Fibrillar collagen NC1 domain-containing protein.
  
0.509
COL27A1
Collagen, type XXVII, alpha 1b.
  
0.493
SERPINH1
Serpin family H member 1; Belongs to the serpin family.
   
 0.492
P4HA3
Prolyl 4-hydroxylase subunit alpha 3.
    
 0.486
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.