Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102351679Uncharacterized protein. (967 aa)    
Predicted Functional Partners:
LOC102365826
Uncharacterized protein.
  
0.903
COL6A1
VWFA domain-containing protein.
   
 0.890
COL6A1-2
Uncharacterized protein.
   
 0.890
FKBP10
Peptidylprolyl isomerase.
   
 
 0.681
TIMP2
TIMP metallopeptidase inhibitor 2.
   
  
 0.638
PRRX1
Paired related homeobox 1.
   
 
 0.634
PRRX2
Paired related homeobox 2.
   
 
 0.621
TGFB3
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 
 0.612
H3ATS1_LATCH
Uncharacterized protein.
  
 
0.607
TIMP3
TIMP metallopeptidase inhibitor 3.
   
  
 0.587
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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