LOC102355329 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC102355329

Cyclic nucleotide-binding domain-containing protein. (162 aa)

Predicted Functional Partners:

PRKX

0.947

LOC102362951

0.939

PRKACB

0.938

PRKG1

0.899

H2ZV04_LATCH

0.766

RPS6KB1

0.743

SGK2

0.734

STK38L

0.669

LOC102356269

0.640

AKAP10

0.636

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKAP10	LOC102355329	ENSLACP00000006138	ENSLACP00000005059	A-kinase anchoring protein 10.	Cyclic nucleotide-binding domain-containing protein.	0.636
AKAP10	LOC102362951	ENSLACP00000006138	ENSLACP00000007730	A-kinase anchoring protein 10.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	0.684
AKAP10	PRKACB	ENSLACP00000006138	ENSLACP00000014312	A-kinase anchoring protein 10.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.684
AKAP10	PRKG1	ENSLACP00000006138	ENSLACP00000006025	A-kinase anchoring protein 10.	Protein kinase cGMP-dependent 1; Belongs to the protein kinase superfamily.	0.636
AKAP10	PRKX	ENSLACP00000006138	ENSLACP00000009063	A-kinase anchoring protein 10.	Protein kinase X-linked; Belongs to the protein kinase superfamily.	0.684
H2ZV04_LATCH	LOC102355329	ENSLACP00000001225	ENSLACP00000005059	Aurora kinase B; Belongs to the protein kinase superfamily.	Cyclic nucleotide-binding domain-containing protein.	0.766
LOC102355329	AKAP10	ENSLACP00000005059	ENSLACP00000006138	Cyclic nucleotide-binding domain-containing protein.	A-kinase anchoring protein 10.	0.636
LOC102355329	H2ZV04_LATCH	ENSLACP00000005059	ENSLACP00000001225	Cyclic nucleotide-binding domain-containing protein.	Aurora kinase B; Belongs to the protein kinase superfamily.	0.766
LOC102355329	LOC102356269	ENSLACP00000005059	ENSLACP00000004006	Cyclic nucleotide-binding domain-containing protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.640
LOC102355329	LOC102362951	ENSLACP00000005059	ENSLACP00000007730	Cyclic nucleotide-binding domain-containing protein.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	0.939
LOC102355329	PRKACB	ENSLACP00000005059	ENSLACP00000014312	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.938
LOC102355329	PRKG1	ENSLACP00000005059	ENSLACP00000006025	Cyclic nucleotide-binding domain-containing protein.	Protein kinase cGMP-dependent 1; Belongs to the protein kinase superfamily.	0.899
LOC102355329	PRKX	ENSLACP00000005059	ENSLACP00000009063	Cyclic nucleotide-binding domain-containing protein.	Protein kinase X-linked; Belongs to the protein kinase superfamily.	0.947
LOC102355329	RPS6KB1	ENSLACP00000005059	ENSLACP00000013485	Cyclic nucleotide-binding domain-containing protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.743
LOC102355329	SGK2	ENSLACP00000005059	ENSLACP00000001562	Cyclic nucleotide-binding domain-containing protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.734
LOC102355329	STK38L	ENSLACP00000005059	ENSLACP00000012233	Cyclic nucleotide-binding domain-containing protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.669
LOC102356269	LOC102355329	ENSLACP00000004006	ENSLACP00000005059	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Cyclic nucleotide-binding domain-containing protein.	0.640
LOC102356269	SGK2	ENSLACP00000004006	ENSLACP00000001562	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.901
LOC102362951	AKAP10	ENSLACP00000007730	ENSLACP00000006138	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	A-kinase anchoring protein 10.	0.684
LOC102362951	LOC102355329	ENSLACP00000007730	ENSLACP00000005059	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	Cyclic nucleotide-binding domain-containing protein.	0.939