LOC102355329 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC102355329

Cyclic nucleotide-binding domain-containing protein. (162 aa)

Predicted Functional Partners:

PRKX

0.931

LOC102362951

0.921

PRKACB

0.920

PRKG1

0.899

H2ZV04_LATCH

0.755

RPS6KB1

0.729

SGK2

0.718

STK38L

0.646

MRVI1

0.622

LYVE1

0.622

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2ZV04_LATCH	LOC102355329	ENSLACP00000001225	ENSLACP00000005059	Aurora kinase B; Belongs to the protein kinase superfamily.	Cyclic nucleotide-binding domain-containing protein.	0.755
LOC102355329	H2ZV04_LATCH	ENSLACP00000005059	ENSLACP00000001225	Cyclic nucleotide-binding domain-containing protein.	Aurora kinase B; Belongs to the protein kinase superfamily.	0.755
LOC102355329	LOC102362951	ENSLACP00000005059	ENSLACP00000007730	Cyclic nucleotide-binding domain-containing protein.	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	0.921
LOC102355329	LYVE1	ENSLACP00000005059	ENSLACP00000021999	Cyclic nucleotide-binding domain-containing protein.	Link domain-containing protein.	0.622
LOC102355329	MRVI1	ENSLACP00000005059	ENSLACP00000020776	Cyclic nucleotide-binding domain-containing protein.	Murine retrovirus integration site 1 homolog.	0.622
LOC102355329	PRKACB	ENSLACP00000005059	ENSLACP00000014312	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.920
LOC102355329	PRKG1	ENSLACP00000005059	ENSLACP00000006025	Cyclic nucleotide-binding domain-containing protein.	Protein kinase cGMP-dependent 1; Belongs to the protein kinase superfamily.	0.899
LOC102355329	PRKX	ENSLACP00000005059	ENSLACP00000009063	Cyclic nucleotide-binding domain-containing protein.	Protein kinase X-linked; Belongs to the protein kinase superfamily.	0.931
LOC102355329	RPS6KB1	ENSLACP00000005059	ENSLACP00000013485	Cyclic nucleotide-binding domain-containing protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.729
LOC102355329	SGK2	ENSLACP00000005059	ENSLACP00000001562	Cyclic nucleotide-binding domain-containing protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.718
LOC102355329	STK38L	ENSLACP00000005059	ENSLACP00000012233	Cyclic nucleotide-binding domain-containing protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.646
LOC102362951	LOC102355329	ENSLACP00000007730	ENSLACP00000005059	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	Cyclic nucleotide-binding domain-containing protein.	0.921
LOC102362951	PRKACB	ENSLACP00000007730	ENSLACP00000014312	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.900
LOC102362951	PRKG1	ENSLACP00000007730	ENSLACP00000006025	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	Protein kinase cGMP-dependent 1; Belongs to the protein kinase superfamily.	0.410
LOC102362951	PRKX	ENSLACP00000007730	ENSLACP00000009063	Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.	Protein kinase X-linked; Belongs to the protein kinase superfamily.	0.560
LYVE1	LOC102355329	ENSLACP00000021999	ENSLACP00000005059	Link domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.622
LYVE1	PRKG1	ENSLACP00000021999	ENSLACP00000006025	Link domain-containing protein.	Protein kinase cGMP-dependent 1; Belongs to the protein kinase superfamily.	0.733
MRVI1	LOC102355329	ENSLACP00000020776	ENSLACP00000005059	Murine retrovirus integration site 1 homolog.	Cyclic nucleotide-binding domain-containing protein.	0.622
MRVI1	PRKG1	ENSLACP00000020776	ENSLACP00000006025	Murine retrovirus integration site 1 homolog.	Protein kinase cGMP-dependent 1; Belongs to the protein kinase superfamily.	0.733
PRKACB	LOC102355329	ENSLACP00000014312	ENSLACP00000005059	Uncharacterized protein; Belongs to the protein kinase superfamily.	Cyclic nucleotide-binding domain-containing protein.	0.920