Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRMT10AtRNA methyltransferase 10A. (349 aa)    
Predicted Functional Partners:
MRPS25
Mitochondrial ribosomal protein S25.
    
 
 0.920
MRPS15
Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.
   
   0.920
MRPS27
Mitochondrial ribosomal protein S27.
   
 
 0.918
MRPS18B
Mitochondrial ribosomal protein S18B.
   
   0.914
MRPS28
Mitochondrial ribosomal protein S28.
   
 
 0.911
MRPS31
Mitochondrial ribosomal protein S31.
   
 
 0.910
MRPS23
Mitochondrial ribosomal protein S23.
   
   0.905
MRPS11
Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.
   
   0.904
MRPS14
Mitochondrial ribosomal protein S14.
    
   0.902
MRPS33
Mitochondrial ribosomal protein S33.
    
   0.900
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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