STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102359274IRF tryptophan pentad repeat domain-containing protein. (424 aa)    
Predicted Functional Partners:
LOC102354416
Uncharacterized protein.
   
 0.983
STAT1
Signal transducer and activator of transcription.
   
 0.906
STAT2
Signal transducer and activator of transcription.
   
 0.906
STAT3
Signal transducer and activator of transcription.
   
 0.880
LOC102348150
Signal transducer and activator of transcription.
   
 0.763
IFNAR1
Uncharacterized protein.
     
 0.694
OTULIN
OTU deubiquitinase with linear linkage specificity.
    
 0.691
BIRC6
Baculoviral IAP repeat containing 6.
    
 0.667
LTA
Lymphotoxin alpha.
   
 0.657
IFIH1
Interferon induced with helicase C domain 1.
   
 0.619
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.