Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC102366825Tr-type G domain-containing protein. (859 aa)    
Predicted Functional Partners:
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.993
RPS16
Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.
  
 0.993
RPL15
Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.
  
 0.992
RPS8
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
 0.992
RPS2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
  
 0.992
RACK1
Receptor for activated C kinase 1.
   
 
 0.992
RPL12
Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.
  
 0.991
RPL9
Ribosomal protein L9.
  
 0.989
RPL4
Ribosomal protein L4.
  
 0.989
RPLP0
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
  
 0.989
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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