SNRPD2 protein (Latimeria chalumnae) - STRING interaction network

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Score

SNRPD2

Small nuclear ribonucleoprotein Sm D2. (108 aa)

Predicted Functional Partners:

SNRPD1

0.999

H2ZZC6_LATCH

0.999

SNRPB

0.999

SNRPE

0.999

LSM2

0.999

SNRPD3

0.999

SNRPG

0.999

LSM7

0.998

SNRPC

0.996

SNRNP70

0.996

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2ZZC6_LATCH	LSM2	ENSLACP00000002747	ENSLACP00000017095	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
H2ZZC6_LATCH	LSM7	ENSLACP00000002747	ENSLACP00000017825	Sm domain-containing protein.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.998
H2ZZC6_LATCH	SNRNP70	ENSLACP00000002747	ENSLACP00000017806	Sm domain-containing protein.	Small nuclear ribonucleoprotein U1 subunit 70.	0.996
H2ZZC6_LATCH	SNRPB	ENSLACP00000002747	ENSLACP00000013006	Sm domain-containing protein.	Small nuclear ribonucleoprotein-associated protein.	0.999
H2ZZC6_LATCH	SNRPC	ENSLACP00000002747	ENSLACP00000015620	Sm domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.998
H2ZZC6_LATCH	SNRPD1	ENSLACP00000002747	ENSLACP00000002188	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
H2ZZC6_LATCH	SNRPD2	ENSLACP00000002747	ENSLACP00000005311	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.999
H2ZZC6_LATCH	SNRPD3	ENSLACP00000002747	ENSLACP00000017248	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.999
H2ZZC6_LATCH	SNRPE	ENSLACP00000002747	ENSLACP00000014330	Sm domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
H2ZZC6_LATCH	SNRPG	ENSLACP00000002747	ENSLACP00000020371	Sm domain-containing protein.	Small nuclear ribonucleoprotein G.	0.999
LSM2	H2ZZC6_LATCH	ENSLACP00000017095	ENSLACP00000002747	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.998
LSM2	LSM7	ENSLACP00000017095	ENSLACP00000017825	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
LSM2	SNRNP70	ENSLACP00000017095	ENSLACP00000017806	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein U1 subunit 70.	0.886
LSM2	SNRPB	ENSLACP00000017095	ENSLACP00000013006	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein-associated protein.	0.983
LSM2	SNRPC	ENSLACP00000017095	ENSLACP00000015620	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.880
LSM2	SNRPD1	ENSLACP00000017095	ENSLACP00000002188	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.979
LSM2	SNRPD2	ENSLACP00000017095	ENSLACP00000005311	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.999
LSM2	SNRPD3	ENSLACP00000017095	ENSLACP00000017248	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D3.	0.976
LSM2	SNRPE	ENSLACP00000017095	ENSLACP00000014330	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
LSM2	SNRPG	ENSLACP00000017095	ENSLACP00000020371	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.968