Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TPBGTrophoblast glycoprotein. (386 aa)    
Predicted Functional Partners:
RDH14
Retinol dehydrogenase 14; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 
 0.657
OPLAH
5-oxoprolinase, ATP-hydrolysing.
      
 0.575
IQCD
IQ motif containing D.
    
 
 0.548
LARP1
La ribonucleoprotein domain family member 1.
    
 
 0.535
METTL27
Methyltransferase like 27.
    
 0.526
TPCN1
Two pore segment channel 1.
     
 0.509
NODAL
TGF_BETA_2 domain-containing protein.
    
 0.493
SFRP5
Secreted frizzled related protein 5.
    
 0.481
LRRC3
Leucine rich repeat containing 3.
    
 0.476
LOC102357009
Southpaw.
    
 0.454
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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