Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMU1SMU1 DNA replication regulator and spliceosomal factor. (513 aa)    
Predicted Functional Partners:
IK
IK cytokine.
   
 0.995
MFAP1
Microfibril associated protein 1.
   
 0.993
ZMAT2
Zinc finger matrin-type 2.
    
 0.956
YBX1
Y-box binding protein 1.
    
   0.945
CD2BP2
CD2 cytoplasmic tail binding protein 2.
    
   0.928
WBP4
WW domain binding protein 4.
    
 0.925
H3AVR5_LATCH
Uncharacterized protein.
    
 0.901
UBL5
Ubiquitin like 5.
    
 0.893
CDC40
Cell division cycle 40.
   
  0.890
GORASP2
Golgi reassembly stacking protein 2.
 
 
    0.888
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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