STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3A6S4_LATCHTPR_REGION domain-containing protein. (405 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.846
LOC102354416
Uncharacterized protein.
   
 0.689
RSAD2
Radical S-adenosyl methionine domain containing 2.
   
 
 0.679
IFIH1
Interferon induced with helicase C domain 1.
   
 0.675
H2ZWQ9_LATCH
WD_REPEATS_REGION domain-containing protein.
    
 0.636
TTC8
Tetratricopeptide repeat domain 8.
    
 0.624
BBS7
Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.
    
 0.606
CDC73
Cell division cycle 73.
    
 0.603
CDC16
Cell division cycle 16.
    
 0.597
PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.591
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.