Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PTAR1Protein prenyltransferase alpha subunit repeat containing 1. (430 aa)    
Predicted Functional Partners:
YKT6
YKT6 v-SNARE homolog; Belongs to the synaptobrevin family.
   
 
 0.972
H3A535_LATCH
CHM Rab escort protein.
   
 0.909
FBXL2
F-box and leucine rich repeat protein 2.
    
 
 0.816
RAB26
Uncharacterized protein.
    
 0.700
SKP1
S-phase kinase associated protein 1; Belongs to the SKP1 family.
    
 
 0.699
DMRT3
Doublesex and mab-3 related transcription factor 3.
      
 0.691
RAB7B
RAB7B, member RAS oncogene family.
    
 0.683
LOC102356101
Uncharacterized protein.
    
 0.681
ARMC5
Armadillo repeat containing 5.
    
 0.681
H3B2K8_LATCH
Uncharacterized protein.
    
 0.681
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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