Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTAFRPlatelet activating factor receptor; Belongs to the G-protein coupled receptor 1 family. (357 aa)    
Predicted Functional Partners:
LOC102359416
Uncharacterized protein.
   
  0.771
GNA11
G protein subunit alpha 11.
   
  0.771
H3BGM0_LATCH
Uncharacterized protein.
   
 
 0.547
PSTPIP1
Proline-serine-threonine phosphatase interacting protein 1.
   
 
 0.520
ZBTB18
Zinc finger and BTB domain containing 18.
  
 
  0.494
NPB
Neuropeptide B.
     
 0.490
TRIO
Trio Rho guanine nucleotide exchange factor.
     
  0.469
GPR12
G protein-coupled receptor 12; Belongs to the G-protein coupled receptor 1 family.
  
   
 0.466
LOC102345518
Death-associated protein.
      
 0.444
H3BGP7_LATCH
Uncharacterized protein.
   
 
 0.444
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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