Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3A6V4_LATCHUncharacterized protein. (91 aa)    
Predicted Functional Partners:
STMND1
Uncharacterized protein.
      
 0.587
TTC22
Tetratricopeptide repeat domain 22.
      
 0.586
GASK1A
Golgi associated kinase 1A.
      
 0.524
SLC66A2
Solute carrier family 66 member 2.
      
 0.523
KIAA1958
KIAA1958.
      
 0.457
FAM89B
Family with sequence similarity 89 member B.
      
 0.439
FOXJ1
Forkhead box J1.
   
  
 0.409
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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