STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRPV6Transient receptor potential cation channel subfamily V member 6; Belongs to the transient receptor (TC 1.A.4) family. (538 aa)    
Predicted Functional Partners:
TRPC5
Transient receptor potential cation channel subfamily C member 5.
     
 0.591
SLC25A24
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.581
LOC102361286
Calmodulin 2; Belongs to the calmodulin family.
    
 
 0.567
LOC102360791
Uncharacterized protein; Belongs to the calmodulin family.
    
 
 0.567
CALM2
Calmodulin 2.
    
 
 0.567
CALM1
Uncharacterized protein; Belongs to the calmodulin family.
    
 
 0.567
NMNAT1
Nicotinamide-nucleotide adenylyltransferase.
   
  
 0.548
CLDN12
Claudin 12.
      
 0.547
PENK
Proenkephalin.
      
 0.543
TRPM4
Transient receptor potential cation channel subfamily M member 4.
   
 
 0.518
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.