LOC102361769 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC102361769

Uncharacterized protein. (924 aa)

Predicted Functional Partners:

PKP1

0.985

PKP2

0.982

DSP

0.951

LOC102361492

0.902

JUP

0.902

LOC102350396

0.822

LOC102348948

0.804

LOC102349393

0.804

H3A0S9_LATCH

0.802

LOC102348788

0.800

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DSP	H3A0S9_LATCH	ENSLACP00000005667	ENSLACP00000003250	Desmoplakin.	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.788
DSP	JUP	ENSLACP00000005667	ENSLACP00000006244	Desmoplakin.	Junction plakoglobin.	0.914
DSP	LOC102348948	ENSLACP00000005667	ENSLACP00000020107	Desmoplakin.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.511
DSP	LOC102349393	ENSLACP00000005667	ENSLACP00000020150	Desmoplakin.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.511
DSP	LOC102361492	ENSLACP00000005667	ENSLACP00000002704	Desmoplakin.	Uncharacterized protein.	0.985
DSP	LOC102361769	ENSLACP00000005667	ENSLACP00000005404	Desmoplakin.	Uncharacterized protein.	0.951
DSP	PKP1	ENSLACP00000005667	ENSLACP00000013195	Desmoplakin.	Plakophilin 1.	0.985
DSP	PKP2	ENSLACP00000005667	ENSLACP00000023417	Desmoplakin.	Uncharacterized protein.	0.991
H3A0S9_LATCH	DSP	ENSLACP00000003250	ENSLACP00000005667	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	Desmoplakin.	0.788
H3A0S9_LATCH	JUP	ENSLACP00000003250	ENSLACP00000006244	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	Junction plakoglobin.	0.985
H3A0S9_LATCH	LOC102361492	ENSLACP00000003250	ENSLACP00000002704	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	Uncharacterized protein.	0.802
H3A0S9_LATCH	LOC102361769	ENSLACP00000003250	ENSLACP00000005404	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	Uncharacterized protein.	0.802
H3A0S9_LATCH	PKP1	ENSLACP00000003250	ENSLACP00000013195	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	Plakophilin 1.	0.926
H3A0S9_LATCH	PKP2	ENSLACP00000003250	ENSLACP00000023417	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	Uncharacterized protein.	0.956
JUP	DSP	ENSLACP00000006244	ENSLACP00000005667	Junction plakoglobin.	Desmoplakin.	0.914
JUP	H3A0S9_LATCH	ENSLACP00000006244	ENSLACP00000003250	Junction plakoglobin.	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.985
JUP	LOC102361492	ENSLACP00000006244	ENSLACP00000002704	Junction plakoglobin.	Uncharacterized protein.	0.902
JUP	LOC102361769	ENSLACP00000006244	ENSLACP00000005404	Junction plakoglobin.	Uncharacterized protein.	0.902
JUP	PKP1	ENSLACP00000006244	ENSLACP00000013195	Junction plakoglobin.	Plakophilin 1.	0.889
JUP	PKP2	ENSLACP00000006244	ENSLACP00000023417	Junction plakoglobin.	Uncharacterized protein.	0.969