Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
POFUT1Protein O-fucosyltransferase 1. (329 aa)    
Predicted Functional Partners:
POFUT2
Protein O-fucosyltransferase 2.
   
 
 0.978
POGLUT1
Protein O-glucosyltransferase 1.
   
 
 0.901
LOC102357987
Uncharacterized protein.
    
 0.804
NOTCH1
Notch receptor 1.
    
 0.804
LOC102353790
Uncharacterized protein.
    
 0.787
NOTCH3
Notch receptor 3.
    
 0.787
AKAP7
A-kinase anchoring protein 7.
      
 0.685
PCSK2
Proprotein convertase subtilisin/kexin type 2.
      
 0.682
B4GALT5
Beta-1,4-galactosyltransferase 5.
      
 0.681
SLC35D1
Solute carrier family 35 member D1.
      
 0.668
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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