STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CIR1Corepressor interacting with RBPJ, 1. (456 aa)    
Predicted Functional Partners:
RBPJ
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.954
RBPJL
Recombination signal binding protein for immunoglobulin kappa J region like.
    
 0.940
SNW1
SNW domain containing 1.
   
 
 0.891
CWC25
CWC25 spliceosome associated protein homolog.
   
 
 0.868
DHX38
DEAH-box helicase 38.
   
 
 0.774
NKAPL
NFKB activating protein like.
   
 
 0.758
PRPF8
Pre-mRNA processing factor 8.
    
 
 0.683
FRG1
FSHD region gene 1.
   
 
 0.616
NRDE2
NRDE-2, necessary for RNA interference, domain containing.
      
 0.616
CWC15
CWC15 spliceosome associated protein homolog.
   
   0.599
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.