STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC149Coiled-coil domain containing 149. (515 aa)    
Predicted Functional Partners:
CCDC125
Coiled-coil domain containing 125.
      
 0.620
CCDC96
Coiled-coil domain containing 96.
      
 0.557
ZCCHC4
Zinc finger CCHC-type containing 4.
      
 0.551
CCDC92
Coiled-coil domain containing 92.
      
 0.511
LGI2
Leucine rich repeat LGI family member 2.
 
    
 0.499
CCDC113
Coiled-coil domain containing 113.
      
 0.480
SEPSECS
O-phosphoseryl-tRNA(Sec) selenium transferase; Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis.
      
 0.468
BICDL1
BICD family like cargo adaptor 1.
      
 0.436
RBM47
RNA binding motif protein 47.
      
 0.432
TAPT1
Transmembrane anterior posterior transformation 1.
      
 0.429
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.