Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CWC27CWC27 spliceosome associated cyclophilin. (473 aa)    
Predicted Functional Partners:
CWC22
CWC22 spliceosome associated protein homolog.
   
 0.979
RNF113A
Ring finger protein 113A.
   
 0.975
DHX16
DEAH-box helicase 16.
   
 0.969
FRA10AC1
FRA10A associated CGG repeat 1.
   
 
 0.966
CDC40
Cell division cycle 40.
    
 0.946
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.945
PRPF8
Pre-mRNA processing factor 8.
   
 0.936
EIF4A3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
    
 0.934
H3A2E3_LATCH
G patch domain and KOW motifs.
    
 0.930
MTREX
Mtr4 exosome RNA helicase.
   
  0.928
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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