Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3A7C6_LATCHRT_RNaseH_2 domain-containing protein. (242 aa)    
Predicted Functional Partners:
H3B9Z3_LATCH
Reverse transcriptase domain-containing protein.
 
     0.689
H3A2D1_LATCH
Integrase catalytic domain-containing protein.
 
 
   0.615
H2ZRT1_LATCH
Integrase catalytic domain-containing protein.
 
     0.543
H2ZTL0_LATCH
Integrase catalytic domain-containing protein.
 
     0.540
H3AQB0_LATCH
RT_RNaseH_2 domain-containing protein.
  
     0.519
H3B3V0_LATCH
Reverse transcriptase domain-containing protein.
  
     0.518
H3B6N1_LATCH
Integrase catalytic domain-containing protein.
 
     0.516
H3ABM2_LATCH
Reverse transcriptase domain-containing protein.
  
     0.512
H2ZUK5_LATCH
Reverse transcriptase domain-containing protein.
  
     0.509
H3AA81_LATCH
Integrase catalytic domain-containing protein.
 
 
   0.508
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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