STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3A7M4_LATCHPhosphodiesterase. (663 aa)    
Predicted Functional Partners:
PDE6G
Phosphodiesterase 6G.
   
 0.848
GNAT3
G protein subunit alpha transducin 3.
   
 0.634
GNAT1
G protein subunit alpha transducin 1.
   
 0.634
GNAT2
G protein subunit alpha transducin 2.
   
 0.634
H3ALJ8_LATCH
PDEase domain-containing protein.
 
      0.574
H2ZZF8_LATCH
Recoverin 3.
   
  
 0.470
GUCY2C
Guanylate cyclase.
   
 0.426
CNGA1
Cyclic nucleotide gated channel subunit alpha 1.
   
 0.423
PDE1B
Phosphodiesterase.
    
0.417
PDE1C
Phosphodiesterase.
    
0.417
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.