Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102356178KASH domain-containing protein. (1450 aa)    
Predicted Functional Partners:
LOC102364002
Uncharacterized protein.
 
  
  0.994
SUN2
SUN domain-containing protein.
    
 0.914
SUN1
Sad1 and UNC84 domain containing 1.
    
 0.906
H3AEI1_LATCH
HTH CENPB-type domain-containing protein.
     
  0.900
H3BCR2_LATCH
Uncharacterized protein.
 
      0.811
SYNE3
Spectrin repeat containing nuclear envelope family member 3.
 
  
0.666
WDR66
WD repeat domain 66.
    
 0.579
CLMN
Calmin.
 
    
 0.554
LMNB1
Lamin B1; Belongs to the intermediate filament family.
    
 0.518
LMNA
Lamin A/C; Belongs to the intermediate filament family.
    
 0.518
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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