STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF20L1PHD finger protein 20 like 1. (1024 aa)    
Predicted Functional Partners:
GATAD2A
GATA zinc finger domain containing 2A.
    
 
 0.643
FANCM
FA complementation group M.
    
 0.639
ZNF280D
Uncharacterized protein.
   
 
 0.626
GATAD2B
GATA zinc finger domain containing 2B.
    
 
 0.603
KANSL1
KAT8 regulatory NSL complex subunit 1.
   
   0.515
ANKMY2
Ankyrin repeat and MYND domain containing 2.
    
 
 0.483
TSPAN13
Tetraspanin 13; Belongs to the tetraspanin (TM4SF) family.
     
 0.477
H3A2C7_LATCH
Uncharacterized protein.
    
   0.450
BCL11A
BAF chromatin remodeling complex subunit BCL11A.
    
   0.450
LOC102354709
HMG box domain-containing protein.
    
 
 0.449
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.