Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TMEFF1Transmembrane protein with EGF-like and two follistatin-like domains 1a. (321 aa)    
Predicted Functional Partners:
SLC16A4
Solute carrier family 16 member 4.
      
 0.659
LOC102354490
Apelin receptor a; Belongs to the G-protein coupled receptor 1 family.
      
 0.564
C1QL2
Complement C1q like 2.
      
 0.547
ZDHHC5
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
    
   0.529
ZDHHC8
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
    
   0.529
APLNR
Apelin receptor; Belongs to the G-protein coupled receptor 1 family.
      
 0.528
PEX5L
Peroxisomal biogenesis factor 5 like.
   
  
 0.528
MMP28
Matrix metallopeptidase 28.
      
 0.528
AACS
Acetoacetyl-CoA synthetase.
      
 0.527
GDF3
Growth differentiation factor 3.
    
 0.521
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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