Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
U2AF1U2 small nuclear RNA auxiliary factor 1. (192 aa)    
Predicted Functional Partners:
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.999
SRSF2
Serine and arginine rich splicing factor 2a.
   
 0.992
SRSF1
Serine and arginine rich splicing factor 1a.
   
 0.972
SF3B1
Splicing factor 3b subunit 1.
   
 0.936
RNPS1
RNA binding protein with serine rich domain 1.
   
 0.928
SRSF3
Serine and arginine rich splicing factor 3.
   
 0.927
SRSF9
Serine and arginine rich splicing factor 9.
   
 0.926
SF3A2
Splicing factor 3a subunit 2.
   
 
 0.903
SF3B2
Splicing factor 3b subunit 2.
   
 0.901
SNRPD1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.851
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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