STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102348211ATG16 domain-containing protein. (243 aa)    
Predicted Functional Partners:
ATG5
Autophagy protein 5; Involved in autophagic vesicle formation.
   
 0.972
ATG12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 0.965
WIPI2
WD repeat domain, phosphoinositide interacting 2.
   
 0.953
ATG3
Autophagy-related protein 3.
   
 0.952
RAB33B
RAB33B, member RAS oncogene family.
    
 
 0.923
WIPI1
WD repeat domain, phosphoinositide interacting 1.
   
 0.844
BECN1
Beclin 1, autophagy related.
    
 0.826
ATG7
Autophagy related 7.
     
 0.805
RB1CC1
RB1-inducible coiled-coil 1.
   
 
 0.778
PIK3C3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.766
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.