LOC102349781 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC102349781

Uncharacterized protein. (904 aa)

Predicted Functional Partners:

H3AGF3_LATCH

0.940

H2ZUI5_LATCH

0.939

H2ZTL3_LATCH

0.918

LOC102356522

0.900

H3AK49_LATCH

0.899

H3AMW9_LATCH

0.897

LOC102363517

0.886

H2ZTK1_LATCH

0.874

H3AEZ5_LATCH

0.870

LOC102345259

0.842

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2ZTK1_LATCH	H2ZTL3_LATCH	ENSLACP00000000722	ENSLACP00000000734	Uncharacterized protein.	Dynein_C domain-containing protein.	0.937
H2ZTK1_LATCH	H2ZUI5_LATCH	ENSLACP00000000722	ENSLACP00000001056	Uncharacterized protein.	Uncharacterized protein.	0.701
H2ZTK1_LATCH	H3AGF3_LATCH	ENSLACP00000000722	ENSLACP00000008724	Uncharacterized protein.	Uncharacterized protein.	0.939
H2ZTK1_LATCH	H3AK49_LATCH	ENSLACP00000000722	ENSLACP00000010020	Uncharacterized protein.	Uncharacterized protein.	0.881
H2ZTK1_LATCH	H3AMW9_LATCH	ENSLACP00000000722	ENSLACP00000010990	Uncharacterized protein.	Uncharacterized protein.	0.904
H2ZTK1_LATCH	LOC102345259	ENSLACP00000000722	ENSLACP00000008367	Uncharacterized protein.	Uncharacterized protein.	0.688
H2ZTK1_LATCH	LOC102349781	ENSLACP00000000722	ENSLACP00000006002	Uncharacterized protein.	Uncharacterized protein.	0.874
H2ZTL3_LATCH	H2ZTK1_LATCH	ENSLACP00000000734	ENSLACP00000000722	Dynein_C domain-containing protein.	Uncharacterized protein.	0.937
H2ZTL3_LATCH	H2ZUI5_LATCH	ENSLACP00000000734	ENSLACP00000001056	Dynein_C domain-containing protein.	Uncharacterized protein.	0.871
H2ZTL3_LATCH	H3AGF3_LATCH	ENSLACP00000000734	ENSLACP00000008724	Dynein_C domain-containing protein.	Uncharacterized protein.	0.928
H2ZTL3_LATCH	H3AK49_LATCH	ENSLACP00000000734	ENSLACP00000010020	Dynein_C domain-containing protein.	Uncharacterized protein.	0.917
H2ZTL3_LATCH	H3AMW9_LATCH	ENSLACP00000000734	ENSLACP00000010990	Dynein_C domain-containing protein.	Uncharacterized protein.	0.531
H2ZTL3_LATCH	LOC102345259	ENSLACP00000000734	ENSLACP00000008367	Dynein_C domain-containing protein.	Uncharacterized protein.	0.810
H2ZTL3_LATCH	LOC102349781	ENSLACP00000000734	ENSLACP00000006002	Dynein_C domain-containing protein.	Uncharacterized protein.	0.918
H2ZUI5_LATCH	H2ZTK1_LATCH	ENSLACP00000001056	ENSLACP00000000722	Uncharacterized protein.	Uncharacterized protein.	0.701
H2ZUI5_LATCH	H2ZTL3_LATCH	ENSLACP00000001056	ENSLACP00000000734	Uncharacterized protein.	Dynein_C domain-containing protein.	0.871
H2ZUI5_LATCH	H3AEZ5_LATCH	ENSLACP00000001056	ENSLACP00000008216	Uncharacterized protein.	Uncharacterized protein.	0.658
H2ZUI5_LATCH	H3AGF3_LATCH	ENSLACP00000001056	ENSLACP00000008724	Uncharacterized protein.	Uncharacterized protein.	0.899
H2ZUI5_LATCH	H3AK49_LATCH	ENSLACP00000001056	ENSLACP00000010020	Uncharacterized protein.	Uncharacterized protein.	0.673
H2ZUI5_LATCH	H3AMW9_LATCH	ENSLACP00000001056	ENSLACP00000010990	Uncharacterized protein.	Uncharacterized protein.	0.449