STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3A8Q9_LATCHUncharacterized protein. (76 aa)    
Predicted Functional Partners:
MYCN
MYCN proto-oncogene, bHLH transcription factor.
    
 0.462
SIN3B
SIN3 transcription regulator family member B.
    
 
 0.444
SIN3A
SIN3 transcription regulator family member A.
    
 
 0.444
KDM6A
Lysine (K)-specific demethylase 6A.
   
 0.443
KDM6B
Lysine demethylase 6B.
   
 0.443
TFDP2
Transcription factor.
    
  0.420
TFDP1
Transcription factor.
    
  0.420
RNF2
Ring finger protein 2.
    
 0.409
RING1
Ring finger protein 1.
    
 0.409
YAF2
YY1 associated factor 2.
    
 0.400
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.