Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMIGO3Adhesion molecule with Ig like domain 3. (510 aa)    
Predicted Functional Partners:
MRPS21
Mitochondrial ribosomal protein S21.
    
 0.614
GRIPAP1
GRIP1 associated protein 1.
      
 0.495
H3AM31_LATCH
3'-5' exonuclease domain-containing protein.
    
 0.482
EXD3
Uncharacterized protein.
    
 0.482
EPB41L1
Erythrocyte membrane protein band 4.1 like 1.
     
 0.468
HOMER1
Homer scaffold protein 1.
    
 0.446
MOGS
Mannosyl-oligosaccharide glucosidase.
      
 0.433
POLR3D
RNA polymerase III subunit D.
      
 0.431
H3A3Z8_LATCH
SERPIN domain-containing protein; Belongs to the serpin family.
     
 0.406
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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