STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRPS1Transcriptional repressor GATA binding 1. (1290 aa)    
Predicted Functional Partners:
NFYB
Nuclear transcription factor Y subunit beta.
    
 
 0.569
H2AZ2
Histone H2A; Belongs to the histone H2A family.
    
 0.561
GTF2A1
General transcription factor IIA subunit 1.
     
 0.538
IRX1
Iroquois homeobox 1.
    
 
 0.535
GTF2A2
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
   
 
  0.531
CHRAC1
Chromatin accessibility complex subunit 1.
   
 
 0.527
NFYC
Nuclear transcription factor Y subunit gamma.
   
 
 0.527
H3B8Q8_LATCH
Forkhead box A3.
    
 0.519
TBP
TATA-box binding protein.
   
 0.517
TBPL2
TATA-box binding protein like 2.
   
 0.517
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.