TRPS1 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID5B	EWSR1	ENSLACP00000017061	ENSLACP00000009467	AT-rich interaction domain 5B.	EWS RNA binding protein 1.	0.641
ARID5B	GATAD2B	ENSLACP00000017061	ENSLACP00000015768	AT-rich interaction domain 5B.	GATA zinc finger domain containing 2B.	0.477
ARID5B	HDAC1	ENSLACP00000017061	ENSLACP00000015194	AT-rich interaction domain 5B.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.775
ARID5B	HDAC8	ENSLACP00000017061	ENSLACP00000012893	AT-rich interaction domain 5B.	Histone deacetylase 8; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.775
ARID5B	TBR1	ENSLACP00000017061	ENSLACP00000004379	AT-rich interaction domain 5B.	T-box brain transcription factor 1.	0.664
ARID5B	TRPS1	ENSLACP00000017061	ENSLACP00000006116	AT-rich interaction domain 5B.	Transcriptional repressor GATA binding 1.	0.692
CTBP1	CTBP2	ENSLACP00000015411	ENSLACP00000013477	C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	C-terminal binding protein 2.	0.901
CTBP1	HDAC1	ENSLACP00000015411	ENSLACP00000015194	C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.764
CTBP1	HDAC8	ENSLACP00000015411	ENSLACP00000012893	C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Histone deacetylase 8; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.666
CTBP1	TRPS1	ENSLACP00000015411	ENSLACP00000006116	C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Transcriptional repressor GATA binding 1.	0.706
CTBP2	CTBP1	ENSLACP00000013477	ENSLACP00000015411	C-terminal binding protein 2.	C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.901
CTBP2	HDAC1	ENSLACP00000013477	ENSLACP00000015194	C-terminal binding protein 2.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.777
CTBP2	HDAC8	ENSLACP00000013477	ENSLACP00000012893	C-terminal binding protein 2.	Histone deacetylase 8; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.666
CTBP2	TRPS1	ENSLACP00000013477	ENSLACP00000006116	C-terminal binding protein 2.	Transcriptional repressor GATA binding 1.	0.706
DYNLL1	TRPS1	ENSLACP00000020737	ENSLACP00000006116	Dynein light chain.	Transcriptional repressor GATA binding 1.	0.737
EWSR1	ARID5B	ENSLACP00000009467	ENSLACP00000017061	EWS RNA binding protein 1.	AT-rich interaction domain 5B.	0.641
EWSR1	TBR1	ENSLACP00000009467	ENSLACP00000004379	EWS RNA binding protein 1.	T-box brain transcription factor 1.	0.653
EWSR1	TRPS1	ENSLACP00000009467	ENSLACP00000006116	EWS RNA binding protein 1.	Transcriptional repressor GATA binding 1.	0.724
GATAD2A	GATAD2B	ENSLACP00000010078	ENSLACP00000015768	GATA zinc finger domain containing 2A.	GATA zinc finger domain containing 2B.	0.998
GATAD2A	HDAC1	ENSLACP00000010078	ENSLACP00000015194	GATA zinc finger domain containing 2A.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.950