Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPATC1Uncharacterized protein. (225 aa)    
Predicted Functional Partners:
CFAP52
Cilia and flagella associated protein 52; Belongs to the peptidase C19 family.
   
  
 0.597
H3B193_LATCH
Uncharacterized protein.
      
 0.595
GSR
Glutathione reductase.
   
   0.569
SPATA6
Spermatogenesis associated 6.
      
 0.531
KRTCAP3
Keratinocyte associated protein 3.
      
 0.469
OAZ1
Uncharacterized protein.
      
 0.468
CALHM6
Calcium homeostasis modulator family member 6.
      
 0.467
CALHM5
Calcium homeostasis modulator family member 5.
      
 0.467
TRAPPC2L
Trafficking protein particle complex 2 like.
      
 0.467
DEUP1
Deuterosome assembly protein 1.
      
 0.467
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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