Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102358007Thioredoxin domain-containing protein. (421 aa)    
Predicted Functional Partners:
LOC102347712
Thioredoxin; Belongs to the thioredoxin family.
    
 
 0.736
NUDCD1
NudC domain containing 1.
    
   0.714
LYPD6
LY6/PLAUR domain containing 6.
      
 0.588
CCDC92
Coiled-coil domain containing 92.
      
 0.559
TXNL4B
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
      
 0.556
FLII
FLII actin remodeling protein.
      
 0.546
LOC102354227
Arm_2 domain-containing protein.
    
 
 0.474
BCL2L13
BCL2 like 13.
      
 0.473
DVL3
Dishevelled segment polarity protein 3.
    
 
 0.473
DVL2
Dishevelled segment polarity protein 2.
    
 
 0.473
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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