Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TNFSF13BTNF superfamily member 13b; Belongs to the tumor necrosis factor family. (122 aa)    
Predicted Functional Partners:
AKTIP
AKT interacting protein.
    
 
 0.959
LOC102358329
TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.
  
  
 
0.901
CD40LG
CD40 ligand; Belongs to the tumor necrosis factor family.
     
 0.856
TNFSF11
TNF superfamily member 11; Belongs to the tumor necrosis factor family.
    
 0.853
TNFSF12
TNF superfamily member 12; Belongs to the tumor necrosis factor family.
    
 0.853
LTBR
Lymphotoxin beta receptor.
     
 0.781
FAM160A2
Family with sequence similarity 160 member A2.
    
   0.761
FAM160A1
Family with sequence similarity 160 member A1.
    
   0.761
MAP3K14
Mitogen-activated protein kinase kinase kinase 14.
     
 0.735
CD40
TNFR-Cys domain-containing protein.
     
 0.720
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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