Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRSF6Serine and arginine rich splicing factor 6. (338 aa)    
Predicted Functional Partners:
NXF1
Zgc:153681.
   
 0.978
SRPK1
SRSF protein kinase 1.
    
 0.950
SRSF3
Serine and arginine rich splicing factor 3.
   
 0.899
ALYREF
Aly/REF export factor.
   
 0.882
SRSF1
Serine and arginine rich splicing factor 1a.
   
 0.866
SRSF9
Serine and arginine rich splicing factor 9.
   
 0.865
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.856
SRSF2
Serine and arginine rich splicing factor 2a.
   
 0.853
RNPS1
RNA binding protein with serine rich domain 1.
   
 0.848
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.840
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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