Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
H3A975_LATCHEBF transcription factor 3a. (422 aa)    
Predicted Functional Partners:
EBF3
EBF transcription factor 3a.
 
     0.932
H3BDD9_LATCH
COE1_DBD domain-containing protein.
 
     0.931
H3A436_LATCH
Uncharacterized protein.
 
     0.927
SCD5
Stearoyl-CoA desaturase 5; Belongs to the fatty acid desaturase type 1 family.
   
 
 0.501
SCD
Stearoyl-CoA desaturase; Belongs to the fatty acid desaturase type 1 family.
   
 
 0.501
LOC102348026
Uncharacterized protein.
    
   0.487
LOC102358575
Uncharacterized protein.
    
   0.487
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.484
ZNF521
Zinc finger protein 521.
   
 0.470
ZNF423
Zinc finger protein 423.
   
 0.464
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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