Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TSKUTsukushi, small leucine rich proteoglycan. (367 aa)    
Predicted Functional Partners:
TBRG1
Transforming growth factor beta regulator 1.
      
 0.854
P2RY2
Purinergic receptor P2Y2; Belongs to the G-protein coupled receptor 1 family.
  
   
 0.810
GDPD5
Glycerophosphodiester phosphodiesterase domain containing 5.
      
 0.743
P2RY6
Pyrimidinergic receptor P2Y6; Belongs to the G-protein coupled receptor 1 family.
      
 0.727
ACER3
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
      
 0.727
FCHSD2
Uncharacterized protein.
     
 0.714
HSPA13
Heat shock protein family A (Hsp70) member 13.
    
 
 0.710
LOC102356421
ISY1 splicing factor homolog.
    
 
 0.684
STOML1
Stomatin like 1.
   
 
 0.653
RPS3
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.611
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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